IL_11DG_064

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

11DG|1|a|A|504, 11DG|1|a|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_064 not in the Motif Atlas

Homologous match to IL_7A0S_009

Geometric discrepancy: 0.2637

The information below is about IL_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

10

Unit IDs

11DG|1|a|G|481
11DG|1|a|A|482
11DG|1|a|A|483
11DG|1|a|C|484
*
11DG|1|a|G|496
11DG|1|a|A|497
11DG|1|a|G|498
11DG|1|a|U|499
11DG|1|a|G|500
11DG|1|a|A|501
11DG|1|a|A|502
11DG|1|a|A|503
11DG|1|a|A|504
11DG|1|a|A|505
11DG|1|a|G|506
11DG|1|a|A|507
11DG|1|a|A|508
11DG|1|a|C|509

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain r

Large ribosomal subunit protein uL22

Chain t

50S ribosomal protein L24