IL_11DG_083

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_083 not in the Motif Atlas

Geometric match to IL_9H3G_243

Geometric discrepancy: 0.231

The information below is about IL_9H3G_243

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

11DG|1|a|G|875
11DG|1|a|C|876
11DG|1|a|A|877
11DG|1|a|A|878
11DG|1|a|G|879
*
11DG|1|a|C|898
11DG|1|a|A|899
11DG|1|a|A|900
11DG|1|a|C|901
11DG|1|a|C|902

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain l

Large ribosomal subunit protein uL16