IL_11DG_098

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_098 not in the Motif Atlas

Geometric match to IL_8B0X_109

Geometric discrepancy: 0.106

The information below is about IL_8B0X_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

11DG|1|a|G|1310
11DG|1|a|G|1311
11DG|1|a|U|1312
11DG|1|a|U|1313
*
11DG|1|a|A|1603
11DG|1|a|C|1604

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

50S ribosomal protein L23