IL_11DG_106

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

11DG|1|a|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_106 not in the Motif Atlas

Geometric match to IL_8OI5_127

Geometric discrepancy: 0.1981

The information below is about IL_8OI5_127

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

11DG|1|a|G|1450
11DG|1|a|C|1451
*
11DG|1|a|G|1459
11DG|1|a|U|1460
11DG|1|a|C|1461

Current chains

Chain a

23S ribosomal RNA

Nearby chains