IL_11DG_115

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_115 not in the Motif Atlas

Geometric match to IL_4WF9_117

Geometric discrepancy: 0.1055

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.2

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

11DG|1|a|G|1666
11DG|1|a|G|1667
11DG|1|a|A|1668
11DG|1|a|A|1669
11DG|1|a|C|1670
11DG|1|a|U|1671
11DG|1|a|A|1672
11DG|1|a|G|1673
11DG|1|a|G|1674
*
11DG|1|a|C|1990
11DG|1|a|U|1991
11DG|1|a|G|1992
11DG|1|a|U|1993
11DG|1|a|C|1994

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

Large ribosomal subunit protein uL14