IL_11DG_116
3D structure
- PDB id
- 11DG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- ACUAGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 11DG|1|a|G|1992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11DG_116 not in the Motif Atlas
- Homologous match to IL_7A0S_062
- Geometric discrepancy: 0.1595
- The information below is about IL_7A0S_062
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_28217.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 11
Unit IDs
11DG|1|a|A|1669
11DG|1|a|C|1670
11DG|1|a|U|1671
11DG|1|a|A|1672
11DG|1|a|G|1673
11DG|1|a|G|1674
*
11DG|1|a|C|1990
11DG|1|a|U|1991
11DG|1|a|G|1992
11DG|1|a|U|1993
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain j
- Large ribosomal subunit protein uL14
Coloring options: