IL_11DG_146

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

11DG|1|a|A|2572, 11DG|1|a|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_146 not in the Motif Atlas

Homologous match to IL_7A0S_090

Geometric discrepancy: 0.1627

The information below is about IL_7A0S_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

11DG|1|a|C|2512
11DG|1|a|A|2513
*
11DG|1|a|U|2571
11DG|1|a|A|2572
11DG|1|a|C|2573
11DG|1|a|G|2574

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

Large ribosomal subunit protein uL13