IL_11EL_012

3D structure

PDB id

11EL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Vibrio cholerae (VC-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

11EL|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11EL_012 not in the Motif Atlas

Homologous match to IL_6CZR_121

Geometric discrepancy: 0.4465

The information below is about IL_6CZR_121

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.5

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

11EL|1|A|G|147
11EL|1|A|G|148
11EL|1|A|A|149
11EL|1|A|U|150
11EL|1|A|A|151
11EL|1|A|A|152
11EL|1|A|C|153
*
11EL|1|A|G|168
11EL|1|A|C|169
11EL|1|A|U|170
11EL|1|A|A|171
11EL|1|A|A|172
11EL|1|A|U|173
11EL|1|A|A|174
11EL|1|A|C|175

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20