IL_11EL_075

3D structure

PDB id

11EL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Vibrio cholerae (VC-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11EL_075 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.225

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

11EL|1|a|C|274
11EL|1|a|C|275
11EL|1|a|U|276
11EL|1|a|G|277
11EL|1|a|A|278
11EL|1|a|A|279
11EL|1|a|U|280
11EL|1|a|C|281
*
11EL|1|a|G|359
11EL|1|a|U|360
11EL|1|a|G|361
11EL|1|a|A|362
11EL|1|a|G|363

Current chains

Chain a

23S ribosomal RNA

Nearby chains