IL_11FV_011

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

11FV|1|C|U|167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_011 not in the Motif Atlas

Homologous match to IL_6CZR_121

Geometric discrepancy: 0.458

The information below is about IL_6CZR_121

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.5

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

11FV|1|C|G|141
11FV|1|C|G|142
11FV|1|C|A|143
11FV|1|C|U|144
11FV|1|C|A|145
11FV|1|C|A|146
11FV|1|C|C|147
*
11FV|1|C|G|162
11FV|1|C|C|163
11FV|1|C|U|164
11FV|1|C|A|165
11FV|1|C|A|166
11FV|1|C|U|167
11FV|1|C|A|168
11FV|1|C|C|169

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain 2

Small ribosomal subunit protein bS20