IL_11FV_020

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

11FV|1|C|U|479

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_020 not in the Motif Atlas

Geometric match to IL_8B0X_021

Geometric discrepancy: 0.0867

The information below is about IL_8B0X_021

Detailed Annotation

tWW-tWH-tHS

Broad Annotation

tWW-tWH-tHS

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

11FV|1|C|G|440
11FV|1|C|G|441
11FV|1|C|A|442
11FV|1|C|G|443
11FV|1|C|G|444
*
11FV|1|C|C|477
11FV|1|C|G|478
11FV|1|C|U|479
11FV|1|C|U|480
11FV|1|C|A|481
11FV|1|C|C|482

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS4

Chain x

Small ribosomal subunit protein bS16