IL_11FV_045

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

11FV|1|C|C|1048

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_045 not in the Motif Atlas

Homologous match to IL_6CZR_154

Geometric discrepancy: 0.1808

The information below is about IL_6CZR_154

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76319.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

11FV|1|C|U|1046
11FV|1|C|G|1047
11FV|1|C|C|1048
11FV|1|C|A|1049
11FV|1|C|U|1050
*
11FV|1|C|A|1198
11FV|1|C|U|1199
11FV|1|C|G|1200

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS3

Chain q

Small ribosomal subunit protein uS10

Chain v

Small ribosomal subunit protein uS14