IL_11FV_053

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_053 not in the Motif Atlas

Geometric match to IL_2A64_006

Geometric discrepancy: 0.2701

The information below is about IL_2A64_006

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

11FV|1|C|C|1253
11FV|1|C|C|1254
11FV|1|C|A|1255
11FV|1|C|A|1256
11FV|1|C|G|1257
*
11FV|1|C|U|1266
11FV|1|C|G|1267
11FV|1|C|G|1268
11FV|1|C|A|1269
11FV|1|C|G|1270

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain 1

Small ribosomal subunit protein uS19

Chain v

Small ribosomal subunit protein uS14