IL_11FV_054

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_054 not in the Motif Atlas

Homologous match to IL_6CZR_164

Geometric discrepancy: 0.1795

The information below is about IL_6CZR_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11FV|1|C|C|1297
11FV|1|C|G|1298
11FV|1|C|G|1299
11FV|1|C|A|1300
11FV|1|C|U|1301
11FV|1|C|C|1302
*
11FV|1|C|G|1323
11FV|1|C|U|1324
11FV|1|C|G|1325
11FV|1|C|A|1326
11FV|1|C|A|1327
11FV|1|C|G|1328

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain u

Small ribosomal subunit protein uS13