IL_11FV_058

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_058 not in the Motif Atlas

Geometric match to IL_8B0X_006

Geometric discrepancy: 0.3655

The information below is about IL_8B0X_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

11FV|1|C|C|1401
11FV|1|C|A|1402
11FV|1|C|C|1403
*
11FV|1|C|G|1485
11FV|1|C|A|1486
11FV|1|C|A|1487
11FV|1|C|G|1488

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA

Chain t

30S ribosomal protein S12