IL_11FV_085

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

11FV|1|I|G|776, 11FV|1|I|A|788, 11FV|1|I|A|789, 11FV|1|I|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_085 not in the Motif Atlas

Geometric match to IL_8B0X_085

Geometric discrepancy: 0.1032

The information below is about IL_8B0X_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89509.2

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

11FV|1|I|G|775
11FV|1|I|G|776
11FV|1|I|G|777
*
11FV|1|I|C|787
11FV|1|I|A|788
11FV|1|I|A|789
11FV|1|I|U|790
11FV|1|I|C|791

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein uL22

Chain K

50S ribosomal protein L2

Chain k

Large ribosomal subunit protein bL34