IL_11FV_094

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_094 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.199

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

11FV|1|I|G|875
11FV|1|I|C|876
11FV|1|I|A|877
11FV|1|I|A|878
11FV|1|I|G|879
*
11FV|1|I|C|898
11FV|1|I|A|899
11FV|1|I|A|900
11FV|1|I|C|901
11FV|1|I|C|902

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL16