IL_11FV_107

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

11FV|1|I|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_107 not in the Motif Atlas

Homologous match to IL_7A0S_041

Geometric discrepancy: 0.1511

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

11FV|1|I|C|1196
11FV|1|I|G|1197
11FV|1|I|U|1198
*
11FV|1|I|A|1247
11FV|1|I|G|1248
11FV|1|I|U|1249
11FV|1|I|G|1250

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL4

Chain T

Large ribosomal subunit protein uL15

Chain Y

50S ribosomal protein L20