IL_11FV_116

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

11FV|1|I|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_116 not in the Motif Atlas

Homologous match to IL_7A0S_051

Geometric discrepancy: 0.4753

The information below is about IL_7A0S_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

25

Unit IDs

11FV|1|I|C|1417
11FV|1|I|G|1418
11FV|1|I|A|1419
11FV|1|I|A|1420
11FV|1|I|G|1421
*
11FV|1|I|C|1577
11FV|1|I|U|1578
11FV|1|I|A|1579
11FV|1|I|A|1580
11FV|1|I|G|1581

Current chains

Chain I

23S ribosomal RNA

Nearby chains