IL_11FV_123

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

11FV|1|I|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_123 not in the Motif Atlas

Geometric match to IL_8B0X_121

Geometric discrepancy: 0.1612

The information below is about IL_8B0X_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

11FV|1|I|C|1489
11FV|1|I|A|1490
11FV|1|I|G|1491
*
11FV|1|I|C|1499
11FV|1|I|G|1500

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2