IL_11HE_001

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

11HE|1|58|C|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HE_001 not in the Motif Atlas

Homologous match to IL_8GLP_001

Geometric discrepancy: 0.1796

The information below is about IL_8GLP_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

11HE|1|28|C|6
11HE|1|28|C|7
*
11HE|1|58|G|149
11HE|1|58|C|150
11HE|1|58|G|151

Current chains

Chain 28

28S rRNA

Chain 58

5.8S rRNA

Nearby chains

Chain 15

60S ribosomal protein L15

Chain aa

Large ribosomal subunit protein eL8

Chain cc

Large ribosomal subunit protein uL23