IL_11HE_006
3D structure
- PDB id
- 11HE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV closed
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HE_006 not in the Motif Atlas
- Homologous match to IL_8GLP_006
- Geometric discrepancy: 0.0639
- The information below is about IL_8GLP_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.5
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
11HE|1|28|C|81
11HE|1|28|U|82
11HE|1|28|C|83
11HE|1|28|A|84
11HE|1|28|G|85
11HE|1|28|U|86
11HE|1|28|A|87
11HE|1|28|A|88
*
11HE|1|28|U|96
11HE|1|28|G|97
11HE|1|28|A|98
11HE|1|28|A|99
11HE|1|28|C|100
11HE|1|28|A|101
11HE|1|28|G|102
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein eL13
- Chain 15
- 60S ribosomal protein L15
- Chain Q
- Large ribosomal subunit protein eL18
- Chain dd
- 60S ribosomal protein L27a
Coloring options: