IL_11HE_017

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUGAAAC*GUGGAUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HE_017 not in the Motif Atlas

Homologous match to IL_8GLP_021

Geometric discrepancy: 0.0843

The information below is about IL_8GLP_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22311.3

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

11

Unit IDs

11HE|1|28|G|415
11HE|1|28|U|416
11HE|1|28|G|417
11HE|1|28|A|418
11HE|1|28|A|419
11HE|1|28|A|420
11HE|1|28|C|421
*
11HE|1|58|G|13
11HE|1|58|U|14
11HE|1|58|G|15
11HE|1|58|G|16
11HE|1|58|A|17
11HE|1|58|U|18
11HE|1|58|C|19

Current chains

Chain 28

28S rRNA

Chain 58

5.8S rRNA

Nearby chains

Chain 17

60S ribosomal protein L17

Chain 32

Large ribosomal subunit protein eL32

Chain L4

60S ribosomal protein L4