IL_11HE_020

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

11HE|1|28|C|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HE_020 not in the Motif Atlas

Geometric match to IL_1S03_002

Geometric discrepancy: 0.2782

The information below is about IL_1S03_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

11HE|1|28|C|459
11HE|1|28|C|460
*
11HE|1|28|G|695
11HE|1|28|C|696
11HE|1|28|G|697

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L6

large ribosomal subunit protein eL6