IL_11HE_022

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GAG*CACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HE_022 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3742

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

11HE|1|28|G|462
11HE|1|28|A|463
11HE|1|28|G|464
*
11HE|1|28|C|691
11HE|1|28|A|692
11HE|1|28|C|693
11HE|1|28|C|694

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L6

large ribosomal subunit protein eL6

Chain gg

60S ribosomal protein L28