IL_11HE_024

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

11HE|1|28|C|481|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HE_024 not in the Motif Atlas

Geometric match to IL_4WF9_035

Geometric discrepancy: 0.3146

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

11HE|1|28|G|481
11HE|1|28|C|481|||A
11HE|1|28|G|482
*
11HE|1|28|C|672
11HE|1|28|C|673

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L4

60S ribosomal protein L4

Chain gg

60S ribosomal protein L28