IL_11HE_028

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

11HE|1|28|C|498

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HE_028 not in the Motif Atlas

Geometric match to IL_3SNP_003

Geometric discrepancy: 0.3586

The information below is about IL_3SNP_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

11HE|1|28|G|497
11HE|1|28|C|498
11HE|1|28|G|499
*
11HE|1|28|C|656
11HE|1|28|C|657

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L4

60S ribosomal protein L4