IL_11HE_048

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HE_048 not in the Motif Atlas

Homologous match to IL_8GLP_289

Geometric discrepancy: 0.0595

The information below is about IL_8GLP_289

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

11HE|1|28|C|1520
11HE|1|28|C|1521
11HE|1|28|G|1522
*
11HE|1|28|C|1655
11HE|1|28|U|1656
11HE|1|28|G|1657

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L4

60S ribosomal protein L4

Chain dd

60S ribosomal protein L27a