IL_11HE_062
3D structure
- PDB id
- 11HE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV closed
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- AGA*UAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HE_062 not in the Motif Atlas
- Homologous match to IL_9PN5_041
- Geometric discrepancy: 0.117
- The information below is about IL_9PN5_041
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.6
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 241
Unit IDs
11HE|1|28|A|1749
11HE|1|28|G|1750
11HE|1|28|A|1751
*
11HE|1|28|U|1779
11HE|1|28|A|1780
11HE|1|28|U|1781
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 10
- Ribosomal protein L10
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain L5
- 60S ribosomal protein L5
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