IL_11HE_067

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UUAAG*CCAUA

Length

10 nucleotides

Bulged bases

11HE|1|28|U|2070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HE_067 not in the Motif Atlas

Homologous match to IL_8GLP_075

Geometric discrepancy: 0.1

The information below is about IL_8GLP_075

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.3

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

24

Unit IDs

11HE|1|28|U|1905
11HE|1|28|U|1906
11HE|1|28|A|1907
11HE|1|28|A|1908
11HE|1|28|G|1909
*
11HE|1|28|C|2067
11HE|1|28|C|2068
11HE|1|28|A|2069
11HE|1|28|U|2070
11HE|1|28|A|2071

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 32

Large ribosomal subunit protein eL32

Chain 5

5S ribosomal RNA; 5S rRNA

Chain L7

60S ribosomal protein L7

Chain Q

Large ribosomal subunit protein eL18

Chain ee

Large ribosomal subunit protein eL33