IL_11HE_111

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

11HE|1|28|A|3785, 11HE|1|28|C|3791, 11HE|1|28|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HE_111 not in the Motif Atlas

Homologous match to IL_8GLP_307

Geometric discrepancy: 0.183

The information below is about IL_8GLP_307

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.3

Basepair signature

cWW-L-tHH-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

9

Unit IDs

11HE|1|28|C|3781
11HE|1|28|C|3782
11HE|1|28|A|3783
11HE|1|28|A|3784
11HE|1|28|A|3785
11HE|1|28|U|3786
11HE|1|28|G|3787
11HE|1|28|C|3788
11HE|1|28|C|3789
11HE|1|28|U|3790
11HE|1|28|C|3791
11HE|1|28|G|3792
*
11HE|1|28|C|3808
11HE|1|28|G|3809
11HE|1|28|C|3810
11HE|1|28|G|3811

Current chains

Chain 28

28S rRNA

Nearby chains