IL_11HE_124

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HE_124 not in the Motif Atlas

Homologous match to IL_9H3G_116

Geometric discrepancy: 0.1526

The information below is about IL_9H3G_116

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.10

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

11HE|1|28|G|4400
11HE|1|28|G|4401
*
11HE|1|28|U|4442
11HE|1|28|C|4443
11HE|1|28|C|4444

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 10

Ribosomal protein L10

Chain 29

Large ribosomal subunit protein eL29

Chain L3

60S ribosomal protein L3