IL_11HE_129

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HE_129 not in the Motif Atlas

Homologous match to IL_8GLP_146

Geometric discrepancy: 0.1232

The information below is about IL_8GLP_146

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46637.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

19

Unit IDs

11HE|1|28|C|4453
11HE|1|28|G|4454
*
11HE|1|28|U|4526
11HE|1|28|G|4527
11HE|1|28|G|4528

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L3

60S ribosomal protein L3