IL_11HE_143

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HE_143 not in the Motif Atlas

Homologous match to IL_8GLP_162

Geometric discrepancy: 0.0705

The information below is about IL_8GLP_162

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

11HE|1|28|U|4638
11HE|1|28|G|4639
11HE|1|28|C|4640
*
11HE|1|28|G|4659
11HE|1|28|G|4660
11HE|1|28|G|4661

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 24

Ribosomal protein L24

Chain 31

60S ribosomal protein L31