IL_11HE_155

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

11HE|1|28|G|5041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HE_155 not in the Motif Atlas

Homologous match to IL_8GLP_176

Geometric discrepancy: 0.0682

The information below is about IL_8GLP_176

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11HE|1|28|U|5003
11HE|1|28|C|5004
11HE|1|28|G|5005
11HE|1|28|U|5006
11HE|1|28|A|5007
11HE|1|28|C|5008
11HE|1|28|G|5009
*
11HE|1|28|U|5039
11HE|1|28|U|5040
11HE|1|28|G|5041
11HE|1|28|A|5042
11HE|1|28|A|5043
11HE|1|28|A|5044

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 24

Ribosomal protein L24

Chain 31

60S ribosomal protein L31

Chain L3

60S ribosomal protein L3