IL_11HE_158

3D structure

PDB id

11HE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV closed

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

11HE|1|5|C|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HE_158 not in the Motif Atlas

Homologous match to IL_8QYX_165

Geometric discrepancy: 0.0712

The information below is about IL_8QYX_165

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

11HE|1|5|C|15
11HE|1|5|A|16
*
11HE|1|5|U|62
11HE|1|5|C|63
11HE|1|5|G|64

Current chains

Chain 5

5S rRNA

Nearby chains

Chain 10

Ribosomal protein L10

Chain 11

60S ribosomal protein L11

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain L5

60S ribosomal protein L5