IL_11HG_009

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

11HG|1|18|G|113, 11HG|1|18|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_009 not in the Motif Atlas

Homologous match to IL_9H3G_163

Geometric discrepancy: 0.1792

The information below is about IL_9H3G_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

11HG|1|18|U|112
11HG|1|18|G|113
11HG|1|18|G|114
11HG|1|18|U|115
*
11HG|1|18|A|348
11HG|1|18|A|349

Current chains

Chain 18

18S rRNA

Nearby chains

Chain DD

Small ribosomal subunit protein uS17

Chain S4

40S ribosomal protein S4

Chain S8

40S ribosomal protein S8