IL_11HG_021

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_021 not in the Motif Atlas

Homologous match to IL_9PN5_162

Geometric discrepancy: 0.1589

The information below is about IL_9PN5_162

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

11HG|1|18|G|437
11HG|1|18|G|438
11HG|1|18|A|439
*
11HG|1|18|U|454
11HG|1|18|A|455
11HG|1|18|C|456

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S6

40S ribosomal protein S6

Chain S8

40S ribosomal protein S8