IL_11HG_024

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUA*UAAU

Length

7 nucleotides

Bulged bases

11HG|1|18|A|555

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_024 not in the Motif Atlas

Geometric match to IL_7ZLQ_002

Geometric discrepancy: 0.3061

The information below is about IL_7ZLQ_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

11HG|1|18|A|529
11HG|1|18|U|530
11HG|1|18|A|531
*
11HG|1|18|U|553
11HG|1|18|A|554
11HG|1|18|A|555
11HG|1|18|U|556

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S9

40S ribosomal protein S9

Chain YY

40S ribosomal protein S30