IL_11HG_041

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

11HG|1|18|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_041 not in the Motif Atlas

Homologous match to IL_9H3G_198

Geometric discrepancy: 0.1188

The information below is about IL_9H3G_198

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

11HG|1|18|G|925
11HG|1|18|A|926
11HG|1|18|C|927
*
11HG|1|18|G|1014
11HG|1|18|U|1015
11HG|1|18|U|1016
11HG|1|18|U|1017

Current chains

Chain 18

18S rRNA

Nearby chains

Chain FF

40S ribosomal protein S13

Chain VV

40S ribosomal protein S27