IL_11HG_048
3D structure
- PDB id
- 11HG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 11HG|1|18|C|1153, 11HG|1|18|U|1155, 11HG|1|18|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HG_048 not in the Motif Atlas
- Homologous match to IL_9H3G_205
- Geometric discrepancy: 0.2416
- The information below is about IL_9H3G_205
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82706.4
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
11HG|1|18|C|1091
11HG|1|18|G|1092
11HG|1|18|A|1093
*
11HG|1|18|U|1152
11HG|1|18|C|1153
11HG|1|18|U|1154
11HG|1|18|U|1155
11HG|1|18|U|1156
11HG|1|18|G|1157
11HG|1|18|G|1158
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain DD
- Small ribosomal subunit protein uS17
- Chain FF
- 40S ribosomal protein S13
- Chain PP
- eS21
- Chain RR
- uS12
- Chain S2
- 40S ribosomal protein S2
- Chain VV
- 40S ribosomal protein S27
- Chain WX
- 40S ribosomal protein S15a
Coloring options: