IL_11HG_058

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGACAGGAUUGACAG*CUUUCUCGAUUCC

Length

28 nucleotides

Bulged bases

11HG|1|18|G|1285, 11HG|1|18|U|1315

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11HG|1|18|G|1280
11HG|1|18|G|1281
11HG|1|18|A|1282
11HG|1|18|C|1283
11HG|1|18|A|1284
11HG|1|18|G|1285
11HG|1|18|G|1286
11HG|1|18|A|1287
11HG|1|18|U|1288
11HG|1|18|U|1289
11HG|1|18|G|1290
11HG|1|18|A|1291
11HG|1|18|C|1292
11HG|1|18|A|1293
11HG|1|18|G|1294
*
11HG|1|18|C|1305
11HG|1|18|U|1306
11HG|1|18|U|1307
11HG|1|18|U|1308
11HG|1|18|C|1309
11HG|1|18|U|1310
11HG|1|18|C|1311
11HG|1|18|G|1312
11HG|1|18|A|1313
11HG|1|18|U|1314
11HG|1|18|U|1315
11HG|1|18|C|1316
11HG|1|18|C|1317

Current chains

Chain 18

18S rRNA

Nearby chains

Chain A

Small ribosomal subunit protein uS19

Chain CC

40S ribosomal protein S10

Chain EE

40S ribosomal protein S12

Chain XX

40S ribosomal protein S29

Chain ZZ

40S ribosomal protein S27a