IL_11HG_064
3D structure
- PDB id
- 11HG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGG*CGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HG_064 not in the Motif Atlas
- Homologous match to IL_9H3G_223
- Geometric discrepancy: 0.1509
- The information below is about IL_9H3G_223
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.4
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 62
Unit IDs
11HG|1|18|U|1347
11HG|1|18|G|1348
11HG|1|18|G|1349
*
11HG|1|18|C|1380
11HG|1|18|G|1381
11HG|1|18|A|1382
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain BB
- 40S_SA_C domain-containing protein
- Chain LA
- La-related protein 1
- Chain RS
- 40S ribosomal protein S17
- Chain S2
- 40S ribosomal protein S2
- Chain S3
- Small ribosomal subunit protein uS3
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