IL_11HG_067

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

11HG|1|18|C|1403, 11HG|1|18|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_067 not in the Motif Atlas

Homologous match to IL_9H3G_226

Geometric discrepancy: 0.2204

The information below is about IL_9H3G_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.5

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

5

Unit IDs

11HG|1|18|A|1402
11HG|1|18|C|1403
11HG|1|18|U|1404
11HG|1|18|A|1405
*
11HG|1|18|U|1441
11HG|1|18|U|1442
11HG|1|18|C|1443
11HG|1|18|U|1444

Current chains

Chain 18

18S rRNA

Nearby chains

Chain AA

Receptor of activated protein C kinase 1

Chain II

Small ribosomal subunit protein uS9

Chain OO

40S ribosomal protein S20