IL_11HG_068

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

11HG|1|18|G|1428

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_068 not in the Motif Atlas

Geometric match to IL_8GLP_268

Geometric discrepancy: 0.1908

The information below is about IL_8GLP_268

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

11HG|1|18|C|1412
11HG|1|18|G|1413
*
11HG|1|18|C|1427
11HG|1|18|G|1428
11HG|1|18|G|1429

Current chains

Chain 18

18S rRNA

Nearby chains

Chain II

Small ribosomal subunit protein uS9

Chain MM

Small ribosomal subunit protein eS19