IL_11HG_073

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

11HG|1|18|C|1701, 11HG|1|18|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_073 not in the Motif Atlas

Homologous match to IL_9PN5_220

Geometric discrepancy: 0.2673

The information below is about IL_9PN5_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

11HG|1|18|C|1700
11HG|1|18|C|1701
11HG|1|18|G|1702
*
11HG|1|18|C|1833
11HG|1|18|A|1834
11HG|1|18|A|1835
11HG|1|18|G|1836

Current chains

Chain 18

18S rRNA

Nearby chains

Chain LA

La-related protein 1

Chain UU

eS26