IL_11HG_111

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

11HG|1|28|G|666, 11HG|1|28|A|667, 11HG|1|28|C|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_111 not in the Motif Atlas

Geometric match to IL_9I0V_004

Geometric discrepancy: 0.2143

The information below is about IL_9I0V_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

11HG|1|28|G|487
11HG|1|28|G|488
*
11HG|1|28|C|665
11HG|1|28|G|666
11HG|1|28|A|667
11HG|1|28|C|668
11HG|1|28|C|669

Current chains

Chain 28

28s rRNA

Nearby chains

Chain L4

60S ribosomal protein L4

Chain Q

Large ribosomal subunit protein eL18

Chain gg

60S ribosomal protein L28