IL_11HG_114

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

11HG|1|28|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_114 not in the Motif Atlas

Homologous match to IL_8GLP_032

Geometric discrepancy: 0.1345

The information below is about IL_8GLP_032

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

11HG|1|28|G|508
11HG|1|28|A|509
11HG|1|28|U|510
*
11HG|1|28|A|649
11HG|1|28|C|650

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 13

60S ribosomal protein L13

Chain dd

60S ribosomal protein L27a