IL_11HG_123

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_123 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.1857

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

11HG|1|28|G|1074
11HG|1|28|G|1075
11HG|1|28|C|1076
*
11HG|1|28|G|1235
11HG|1|28|C|1236

Current chains

Chain 28

28s rRNA

Nearby chains

Chain L4

60S ribosomal protein L4

Chain L6

Large ribosomal subunit protein eL6

Chain L7

60S ribosomal protein L7