IL_11HG_162

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

11HG|1|28|C|1935, 11HG|1|28|A|2041, 11HG|1|28|U|2044, 11HG|1|28|G|2045

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_162 not in the Motif Atlas

Homologous match to IL_8GLP_080

Geometric discrepancy: 0.0731

The information below is about IL_8GLP_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34501.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

11HG|1|28|G|1933
11HG|1|28|A|1934
11HG|1|28|C|1935
11HG|1|28|C|1936
11HG|1|28|C|1937
11HG|1|28|C|1938
11HG|1|28|A|1939
11HG|1|28|G|1940
11HG|1|28|A|1941
11HG|1|28|A|1942
11HG|1|28|A|1943
11HG|1|28|A|1944
*
11HG|1|28|U|2038
11HG|1|28|G|2039
11HG|1|28|A|2040
11HG|1|28|A|2041
11HG|1|28|A|2042
11HG|1|28|A|2043
11HG|1|28|U|2044
11HG|1|28|G|2045
11HG|1|28|G|2046
11HG|1|28|A|2047
11HG|1|28|U|2048
11HG|1|28|G|2049
11HG|1|28|G|2050
11HG|1|28|C|2051
11HG|1|28|G|2052
11HG|1|28|C|2053

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 10

Ribosomal protein L10

Chain 40

Large ribosomal subunit protein eL40

Chain 6

5S ribosomal RNA; 5S rRNA

Chain L3

60S ribosomal protein L3

Chain bb

Large ribosomal subunit protein uL13

Chain ee

Large ribosomal subunit protein eL33